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Sample GSM816627 Query DataSets for GSM816627
Status Public on Oct 14, 2011
Title Duke_DnaseSeq_MCF-7
Sample type SRA
Source name MCF-7
Organism Homo sapiens
Characteristics datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell description: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
controlid: MCF-7/Input
labversion: v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05,1% ENCODE array platform validation tests
replicate: 1,2
cell description: mammary gland, adenocarcinoma. (PMID: 4357757)
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
controlid: MCF-7/Input
labversion: v 1
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol MCF-7_Crawford_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 13, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32970 Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX100886
BioSample SAMN00739097
Named Annotation GSM816627_hg19_wgEncodeOpenChromDnaseMcf7BaseOverlapSignal.bigWig
Named Annotation GSM816627_hg19_wgEncodeOpenChromDnaseMcf7Sig.bigWig

Supplementary file Size Download File type/resource
GSM816627_hg19_wgEncodeOpenChromDnaseMcf7BaseOverlapSignal.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM816627_hg19_wgEncodeOpenChromDnaseMcf7Pk.narrowPeak.gz 2.0 Mb (ftp)(http) NARROWPEAK
GSM816627_hg19_wgEncodeOpenChromDnaseMcf7Sig.bigWig 3.2 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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