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Sample GSM816438 Query DataSets for GSM816438
Status Public on Oct 13, 2011
Title USC_ChipSeq_MCF-7_TCF7L2_UCDavis
Sample type SRA
Source name MCF-7
Organism Homo sapiens
Characteristics lab: USC
lab description: Farnham - University of Southern California
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: MCF-7
cell organism: human
cell description: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: TCF7L2
antibody antibodydescription: Rabbit monoclonal. Antibody Target: TCF7L2
antibody targetdescription: TCF7L2 (formerly known as TCF4) is a member of the high mobility group (HMG) DNA binding protein family of transcription factors which consists of the following: Lymphoid enhancer factor 1 (LEF1), T Cell Factor 1 (TCF1), TCF3 and TCF4. Note: there is an official TCF-4
antibody vendorname: Cell Signaling Technology
antibody vendorid: 2569
control: UCDavis
control description: Input library was prepared at UC Davis.
control: UCDavis
control description: Input library was prepared at UC Davis.
controlid: wgEncodeEH000762
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol MCF-7_Farnham_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Oct 13, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100943
BioSample SAMN00739154
Named Annotation GSM816438_hg19_wgEncodeSydhTfbsMcf7Tcf7l2UcdSig.bigWig

Supplementary file Size Download File type/resource
GSM816438_hg19_wgEncodeSydhTfbsMcf7Tcf7l2UcdPk.narrowPeak.gz 351.8 Kb (ftp)(http) NARROWPEAK
GSM816438_hg19_wgEncodeSydhTfbsMcf7Tcf7l2UcdSig.bigWig 375.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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