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Sample GSM812 Query DataSets for GSM812
Status Public on Feb 12, 2002
Title CGH_Albertson_MDA-MB-231
Sample type genomic
 
Channel 1
Source name Cell line MDA-MB-231
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name normal male reference genomic DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description ATCC cell line <a href="http://www.atcc.org/SearchCatalogs/longview.cfm?view=ce,4910459,HTB-26&text=HTB%2D26">HTB-26</a>.
Breast adenocarcinoma derived from pleural effusion in a 51 year old female.
The cell line is aneuploid female, with chromosome counts in the near-triploid range. Normal chromosomes N8 and N15 were absent. Eleven stable rearranged marker chromosomes are noted as well as unassignable chromosomes in addition to the majority of autosomes that are trisomic. Many of the marker chromosomes are identical to those shown in the karyotype reported by K.L. Satya-Prakash, et al.
 
Submission date Jan 17, 2002
Last update date May 27, 2005
Contact name Donna G Albertson
E-mail(s) albertson@cc.ucsf.edu
Phone 415 502-8463
Organization name University of California San Francisco
Department Comprehensive Cancer Center
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL28
Series (1)
GSE16 Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF Unique row identifier, genome position order
VALUE aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV Standard deviation of VALUE
NO_REPLICATES Number of replicate spot measurements

Data table
ID_REF VALUE LINEAR_RATIO LOG2STDDEV NO_REPLICATES
1 -0.531156 0.692 0.008186 3
2 0
3 0.014983 1.010439 0.020834 3
4 0.043509 1.030617 0.022214 3
5 -0.121819 0.919028 0.003021 3
6 0.13793 1.100325 0.0113 3
7 0.015925 1.011099 0.002442 3
8 0.042648 1.030002 0.019782 3
9 0.10912 1.07857 0.017698 3
10 0.114804 1.082828 0.006084 3
11 -0.016648 0.988527 0.007786 3
12 0
13 -0.007754 0.99464 0.022295 3
14 0.067413 1.047836 0.00725 3
15 0.060716 1.042983 0.035449 3
16 0.05966 1.04222 0.013185 3
17 0.097127 1.069641 0.019934 2
18 0.30131 1.232263 0.047627 3
19 0.078308 1.055779 0.023895 3
20 -0.060923 0.95865 0.008043 3

Total number of rows: 2463

Table truncated, full table size 77 Kbytes.




Supplementary data files not provided
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