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Sample GSM8114686 Query DataSets for GSM8114686
Status Public on Jun 20, 2024
Title ATAC-Seq bone marrow immature B cells Ikzf1(AID/AID) Ikzf3(AID/AID) R26(Tir2/Tir2) 12h 5-Ph-IAA_1
Sample type SRA
 
Source name bone marrow
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: bone marrow
cell type: immature B cells
genotype: Ikzf1(AID/AID) Ikzf3(AID/AID) R26(Tir2/Tir2)
cell preparation: Ex-vivo FACS sorted from bone marrow
treatment: 12h 5-Ph-IAA
replicate number: 1
Extracted molecule genomic DNA
Extraction protocol King Fisher RNA isolation, rRNA depletion
ATAC-Seq libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy ATAC-seq
Library source genomic
Library selection other
Instrument model NextSeq 2000
 
Data processing ATAC-Seq: Only reads that passed the Illumina quality filtering were processed. Reads were aligned with the bowtie program version 2.3.5.1 to the mm10 genome version of December 2011 (GRCm38), including NZ_CP083274.1 Escherichia coli strain Rosetta2-DE3 chromosome (4.5Mb).
Assembly: mm10
Supplementary files format and content: bw (bigwig) = read coverage (reads per million) in bigWIG format
 
Submission date Feb 27, 2024
Last update date Jun 20, 2024
Contact name Meinrad Busslinger
E-mail(s) meinrad.busslinger@imp.ac.at
Organization name IMP
Lab Busslinger
Street address Campus-Vienna-Biocenter 1
City Vienna
ZIP/Postal code A-1030
Country Austria
 
Platform ID GPL30172
Series (2)
GSE259355 Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development [ATAC-seq]
GSE260523 Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development
Relations
BioSample SAMN40160804
SRA SRX23761465

Supplementary file Size Download File type/resource
GSM8114686_231931.mm10_rosetta.231931_S23_R1_001.fastq.sorted.density_150.rpm.bw 378.3 Mb (ftp)(http) BW
SRA Run SelectorHelp
Raw data are available in SRA

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