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Status |
Public on Jun 20, 2024 |
Title |
ATAC-Seq bone marrow Pre-B cells Ikzf1(AID/AID) Ikzf3(AID/AID) R26(Tir2/Tir2) Ctr_2 |
Sample type |
SRA |
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|
Source name |
bone marrow
|
Organism |
Mus musculus |
Characteristics |
strain: C57BL/6 tissue: bone marrow cell type: Pre-B cells genotype: Ikzf1(AID/AID) Ikzf3(AID/AID) R26(Tir2/Tir2) cell preparation: Ex-vivo FACS sorted from bone marrow treatment: Ctr replicate number: 2
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Extracted molecule |
genomic DNA |
Extraction protocol |
King Fisher RNA isolation, rRNA depletion ATAC-Seq libraries were prepared for sequencing using standard Illumina protocols
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|
Library strategy |
ATAC-seq |
Library source |
genomic |
Library selection |
other |
Instrument model |
NextSeq 2000 |
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Data processing |
ATAC-Seq: Only reads that passed the Illumina quality filtering were processed. Reads were aligned with the bowtie program version 2.3.5.1 to the mm10 genome version of December 2011 (GRCm38), including NZ_CP083274.1 Escherichia coli strain Rosetta2-DE3 chromosome (4.5Mb). Assembly: mm10 Supplementary files format and content: bw (bigwig) = read coverage (reads per million) in bigWIG format
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|
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Submission date |
Feb 27, 2024 |
Last update date |
Jun 20, 2024 |
Contact name |
Meinrad Busslinger |
E-mail(s) |
meinrad.busslinger@imp.ac.at
|
Organization name |
IMP
|
Lab |
Busslinger
|
Street address |
Campus-Vienna-Biocenter 1
|
City |
Vienna |
ZIP/Postal code |
A-1030 |
Country |
Austria |
|
|
Platform ID |
GPL30172 |
Series (2) |
GSE259355 |
Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development [ATAC-seq] |
GSE260523 |
Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development |
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Relations |
BioSample |
SAMN40160836 |
SRA |
SRX23761433 |