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Sample GSM810 Query DataSets for GSM810
Status Public on Feb 12, 2002
Title CGH_Albertson_HCT116
Sample type genomic
 
Channel 1
Source name Cell line HCT116
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name normal male reference genomic DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description ATCC cell line <a href="http://www.atcc.org/SearchCatalogs/longview.cfm?view=ce,446344,CCL-247&text=CCL%2D247">CCL-247</a>.
Colorectal carcinoma in a male.
The cells are positive for keratin by immunoperoxidase staining. HCT 116 cells are positive for transforming growth factor beta 1 (TGF beta 1) and beta 2 (TGF beta 2) expression. This line has a mutation in codon 13 of the ras protooncogene, and can be used as a positive control for PCR assays of mutation in this codon.
 
Submission date Jan 17, 2002
Last update date May 27, 2005
Contact name Donna G Albertson
E-mail(s) albertson@cc.ucsf.edu
Phone 415 502-8463
Organization name University of California San Francisco
Department Comprehensive Cancer Center
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL28
Series (1)
GSE16 Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF Unique row identifier, genome position order
VALUE aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV Standard deviation of VALUE
NO_REPLICATES Number of replicate spot measurements

Data table
ID_REF VALUE LINEAR_RATIO LOG2STDDEV NO_REPLICATES
1 0.048306 1.03405 0.03449 3
2 0
3 0.099494 1.071398 0.003851 3
4 0.052516 1.037072 0.003308 3
5 0.109749 1.079041 0.017106 3
6 0.05291 1.037356 0.000805 2
7 0.024758 1.017309 0.003557 2
8 0
9 -0.01146 0.992088 0.013035 3
10 -0.012977 0.991045 0.005325 3
11 -0.009061 0.993739 0.014461 3
12 -0.009636 0.993343 0.01609 3
13 0.150993 1.110333 0.008394 3
14 0.075809 1.053952 0.004607 3
15 0.161287 1.118284 0.010966 3
16 0.03631 1.025488 0.012919 3
17 0.084627 1.060413 0.009137 3
18 0.026691 1.018673 0.008192 3
19 0.05709 1.040365 0.010048 3
20 0.038481 1.027032 0.00704 3

Total number of rows: 2463

Table truncated, full table size 77 Kbytes.




Supplementary data files not provided
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