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Sample GSM809 Query DataSets for GSM809
Status Public on Feb 12, 2002
Title CGH_Albertson_GM13330-010220
Sample type genomic
 
Channel 1
Source name Cell line GM13330
Organism Homo sapiens
Characteristics Coriell cell line repository identifier: GM13330
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM13330
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
 
Channel 2
Source name normal male reference genomic DNA
Organism Homo sapiens
Biomaterial provider Coriell
Extracted molecule genomic DNA
 
 
Description Coriell Cell Repositories cell line <a href="http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM13330">GM13330</a>.
Fibroblast cell line derived from a 2 day old male with absent thumbs, heart anomalies, and other malformations. Culture established from a muscle biopsy; passage 4 at CCR.
Chromosomal abnormalities are present.
Karyotype is 46,XY,-4,+der(4)t(1;4)(4pter> 4q35::1q25>1qter)mat
 
Submission date Jan 17, 2002
Last update date Nov 30, 2005
Contact name Donna G Albertson
E-mail(s) albertson@cc.ucsf.edu
Phone 415 502-8463
Organization name University of California San Francisco
Department Comprehensive Cancer Center
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL28
Series (1)
GSE16 Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF Unique row identifier, genome position order
VALUE aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV Standard deviation of VALUE
NO_REPLICATES Number of replicate spot measurements

Data table
ID_REF VALUE LINEAR_RATIO LOG2STDDEV NO_REPLICATES
1 1.063878 0.014919 3
2 0.20747 1.154662 0.129871 2
3 0.063076 1.044691 0.006352 3
4 0.123881 1.089662 0.012232 3
5 0.154343 1.112915 0.017326 3
6 -0.043892 0.970034 0.011417 3
7 0.094144 1.067432 0.005389 2
8 -0.071437 0.951689 0.001627 3
9 0.122802 1.088847 0.006067 3
10 0.072896 1.051826 0.00398 3
11 0.01823 1.012716 0.002309 3
12 0.022434 1.015672 0.003236 2
13 0.087401 1.062455 0.003684 3
14 0.05771 1.040813 0.027543 3
15 0.096025 1.068824 0.013804 3
16 0.103051 1.074042 0.016306 3
17 0.110311 1.079461 0.02403 3
18 0.165542 1.121587 0.008504 3
19 0.067904 1.048193 0.006948 3
20 0

Total number of rows: 2463

Table truncated, full table size 77 Kbytes.




Supplementary data files not provided
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