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Sample GSM8083254 Query DataSets for GSM8083254
Status Public on Jul 05, 2024
Title Alveolar macrophages from control mouse (sample #1)
Sample type SRA
 
Source name Lung
Organism Mus musculus
Characteristics tissue: Lung
cell type: Primary alveolar macrophages
genotype: Sftpc-CreERt2(+/-)
Extracted molecule total RNA
Extraction protocol Cell as input and lysis accroding to manufacturer's instructions of SMART-Seq Stranded Kit (Takara)
Libraries were prepared using the SMART-Seq Stranded Kit (Takara)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Description N11301_01
Data processing Trimming adaptor sequences and removing reads of low quality were performed by cutadapt (v2.4).
Quantified reads were aligned to the mouse genome (GRCm38) by STAR (v2.7.2a) and then gene-level read counts were generated based on the annotations of Gencode (vM25)
Assembly: GRCm38
Supplementary files format and content: tab-delimited text files include read count values for each sample
 
Submission date Feb 16, 2024
Last update date Jul 05, 2024
Contact name Chia-Lang Hsu
E-mail(s) chialanghsu@ntuh.gov.tw
Organization name National Taiwan University Hospital
Department Department of Medical Research
Street address No. 7, Zhongshan S. Rd.
City Taipei
ZIP/Postal code 100
Country Taiwan
 
Platform ID GPL24247
Series (1)
GSE255949 Gene expression of alveolar macrophage in mice with AT2 cell-specific Cpt1a deletion
Relations
BioSample SAMN39964386
SRA SRX23642287

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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