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Sample GSM808 Query DataSets for GSM808
Status Public on Feb 12, 2002
Title CGH_Albertson_GM13031-010117
Sample type genomic
 
Channel 1
Source name Cell line GM13031
Organism Homo sapiens
Characteristics Coriell cell line repository identifier: GM13031
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM13031
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
 
Channel 2
Source name normal male reference genomic DNA
Organism Homo sapiens
Biomaterial provider Coriell
Extracted molecule genomic DNA
 
 
Description Coriell Cell Repositories cell line <a href="http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM13031">GM13031</a>.
Lymphoblast cell line derived from a 4 year old male with homeobox deletion.
Chromosome abnormalities are present.
Karyotype is 46,XY,del(17)(pter>q21.3::q23>qter)
 
Submission date Jan 17, 2002
Last update date Nov 30, 2005
Contact name Donna G Albertson
E-mail(s) albertson@cc.ucsf.edu
Phone 415 502-8463
Organization name University of California San Francisco
Department Comprehensive Cancer Center
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL28
Series (1)
GSE16 Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF Unique row identifier, genome position order
VALUE aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV Standard deviation of VALUE
NO_REPLICATES Number of replicate spot measurements

Data table
ID_REF VALUE LINEAR_RATIO LOG2STDDEV NO_REPLICATES
1 1.102613 0.026452 3
2 0
3 -0.033834 0.976821 0.008684 3
4 -0.035814 0.975481 0.010199 3
5 0.05148 1.036328 0.011164 3
6 0.011578 1.008058 0.008979 3
7 0.040318 1.028341 0.013491 3
8 0.016002 1.011153 0.008873 3
9 -0.059625 0.959514 0.014661 3
10 -0.004301 0.997024 0.006791 3
11 0.004826 1.003351 0.008003 3
12 -0.056681 0.961474 0.011039 3
13 0.074531 1.053019 0.006877 3
14 0.045353 1.031936 0.008246 3
15 0.076319 1.054325 0.009257 3
16 -0.054619 0.962848 0.004613 3
17 0.089862 1.064268 0.015139 3
18 0.04848 1.034175 0.003561 3
19 0.0796 1.056725 0.002222 3
20 0.052127 1.036793 0.008932 3

Total number of rows: 2463

Table truncated, full table size 77 Kbytes.




Supplementary data files not provided
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