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Sample GSM806

Query DataSets for GSM806

Status

Public on Feb 12, 2002

Title

CGH_Albertson_GM07408-010117

Sample type

genomic

Channel 1

Source name

Cell line GMGM07408

Organism

Homo sapiens

Characteristics

Coriell cell line repository identifier: GM07408
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM07408

Biomaterial provider

Coriell Cell Repositories
Coriell

Extracted molecule

genomic DNA

Channel 2

Source name

normal male reference genomic DNA

Organism

Homo sapiens

Biomaterial provider

Coriell

Extracted molecule

genomic DNA

Description

Coriell Cell Repositories cell line <a href="http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM07408">GM07408</a>.
Chorionic villus cell line derived from a 12 gestational week fetus.
Trisomy 20 is present.
Karyotype is 7,XX,+20 with 10% of cells showing random chromosome loss.

Submission date

Jan 17, 2002

Last update date

Nov 30, 2005

Contact name

Donna G Albertson

E-mail(s)

albertson@cc.ucsf.edu

Phone

415 502-8463

Organization name

University of California San Francisco

Department

Comprehensive Cancer Center

Street address

City

San Francisco

State/province

ZIP/Postal code

94143

Country

USA

Platform ID

GPL28

Series (1)

GSE16

Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF	Unique row identifier, genome position order
VALUE	aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO	Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV	Standard deviation of VALUE
NO_REPLICATES	Number of replicate spot measurements

Data table
ID_REF	VALUE	LINEAR_RATIO	LOG2STDDEV	NO_REPLICATES
1	0.094405	1.067625	0.02584	3
2				0
3	-0.042103	0.971238	0.010132	3
4	-0.026335	0.981912	0.002803	3
5	-0.031484	0.978414	0.011016	3
6	0.002378	1.001649	0.006956	3
7	-0.013998	0.990345	0.014428	3
8	-0.01435	0.990103	0.009583	3
9	-0.010277	0.992902	0.013488	3
10	-0.032799	0.977522	0.010389	3
11	-0.009948	0.993128	0.01811	3
12	0.005612	1.003897	0.006544	3
13	0.046674	1.032881	0.012148	3
14	-0.001207	0.999164	0.015193	3
15	0.035422	1.024856	0.005943	3
16	-0.032072	0.978015	0.004329	3
17	-0.006889	0.995236	0.001533	3
18				0
19	0.032471	1.022762	0.005665	3
20	-0.025308	0.982611	0.0104	3

Total number of rows: 2463

Table truncated, full table size 75 Kbytes.

Supplementary data files not provided