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Sample GSM803529 Query DataSets for GSM803529
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_H1-hESC_JunD_v041610.2
Sample type SRA
 
Source name H1-hESC
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: rabbit polyclonal IgG. Antibody Target: JunD
antibody targetdescription: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-74
controlid: SL1398
labexpid: SL2690,SL3065
replicate: 1,2
softwareversion: MACS
antibody: JunD
antibody antibodydescription: rabbit polyclonal IgG
antibody targetdescription: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-74
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.2
protocol description: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid: SL1398
labexpid: SL2690
replicate: 1
replicate description: tier 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol missing
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100574
BioSample SAMN00738491
Named Annotation GSM803529_hg19_wgEncodeHaibTfbsH1hescJundV0416102RawRep1.bigWig
Named Annotation GSM803529_hg19_wgEncodeHaibTfbsH1hescJundV0416102RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803529_hg19_wgEncodeHaibTfbsH1hescJundV0416102PkRep1.broadPeak.gz 61.6 Kb (ftp)(http) BROADPEAK
GSM803529_hg19_wgEncodeHaibTfbsH1hescJundV0416102PkRep2.broadPeak.gz 310.1 Kb (ftp)(http) BROADPEAK
GSM803529_hg19_wgEncodeHaibTfbsH1hescJundV0416102RawRep1.bigWig 4.9 Mb (ftp)(http) BIGWIG
GSM803529_hg19_wgEncodeHaibTfbsH1hescJundV0416102RawRep2.bigWig 65.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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