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Sample GSM803525 Query DataSets for GSM803525
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_K562_Sin3Ak-20_v041610.1
Sample type SRA
Source name K562
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Rabbit polyclonal, Sin3A (k-20). Antibody Target: SIN3AK20
antibody targetdescription: Co-repressor interacting with HDAC1, N-coR, SMRT, and MeCP2
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-994
controlid: SL2455
labexpid: SL3273,SL3496
replicate: 1,2
softwareversion: MACS
antibody: Sin3Ak-20
antibody antibodydescription: Rabbit polyclonal, Sin3A (k-20).
antibody targetdescription: Co-repressor interacting with HDAC1, N-coR, SMRT, and MeCP2
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-994
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL2455
labexpid: SL3273
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100570
BioSample SAMN00738487
Named Annotation GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep1.bigWig
Named Annotation GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101PkRep1.broadPeak.gz 40.5 Kb (ftp)(http) BROADPEAK
GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101PkRep2.broadPeak.gz 206.1 Kb (ftp)(http) BROADPEAK
GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep1.bigWig 15.3 Mb (ftp)(http) BIGWIG
GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep2.bigWig 30.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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