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Sample GSM803525 Query DataSets for GSM803525
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_K562_Sin3Ak-20_v041610.1
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Rabbit polyclonal, Sin3A (k-20). Antibody Target: SIN3AK20
antibody targetdescription: Co-repressor interacting with HDAC1, N-coR, SMRT, and MeCP2
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-994
controlid: SL2455
labexpid: SL3273,SL3496
replicate: 1,2
softwareversion: MACS
antibody: Sin3Ak-20
antibody antibodydescription: Rabbit polyclonal, Sin3A (k-20).
antibody targetdescription: Co-repressor interacting with HDAC1, N-coR, SMRT, and MeCP2
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-994
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL2455
labexpid: SL3273
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100570
BioSample SAMN00738487
Named Annotation GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep1.bigWig
Named Annotation GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101PkRep1.broadPeak.gz 40.5 Kb (ftp)(http) BROADPEAK
GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101PkRep2.broadPeak.gz 206.1 Kb (ftp)(http) BROADPEAK
GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep1.bigWig 15.3 Mb (ftp)(http) BIGWIG
GSM803525_hg19_wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep2.bigWig 30.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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