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Sample GSM803523 Query DataSets for GSM803523
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_K562_Max_v041610.2
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max
antibody targetdescription: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-197
controlid: SL1396,SL1397
labexpid: SL2945,SL3070
replicate: 1,2
cell sex: F
antibody: Max
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin.
antibody targetdescription: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-197
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.2
protocol description: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid: SL1396
labexpid: SL2945
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100568
BioSample SAMN00738485
Named Annotation GSM803523_hg19_wgEncodeHaibTfbsK562MaxV0416102RawRep1.bigWig
Named Annotation GSM803523_hg19_wgEncodeHaibTfbsK562MaxV0416102RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803523_hg19_wgEncodeHaibTfbsK562MaxV0416102PkRep1.broadPeak.gz 700.4 Kb (ftp)(http) BROADPEAK
GSM803523_hg19_wgEncodeHaibTfbsK562MaxV0416102PkRep2.broadPeak.gz 1019.1 Kb (ftp)(http) BROADPEAK
GSM803523_hg19_wgEncodeHaibTfbsK562MaxV0416102RawRep1.bigWig 32.3 Mb (ftp)(http) BIGWIG
GSM803523_hg19_wgEncodeHaibTfbsK562MaxV0416102RawRep2.bigWig 73.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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