NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM803510 Query DataSets for GSM803510
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_ETS1_PCR1x
Sample type SRA
 
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Rabbit polyclonal IgG. Antibody Target: ETS1
antibody targetdescription: ETS transcriptions factors, such as ETS1, regulate numerous genes and are involved in stem cell development, cell senescence and death, and tumorigenesis
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-350
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL1613
labexpid: SL1655,SL1507
replicate: 1,2
antibody antibodydescription: Rabbit polyclonal IgG
antibody targetdescription: ETS transcriptions factors, such as ETS1, regulate numerous genes and are involved in stem cell development, cell senescence and death, and tumorigenesis
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-350
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL1613
labexpid: SL1507
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100555
BioSample SAMN00738472
Named Annotation GSM803510_hg19_wgEncodeHaibTfbsGm12878Ets1Pcr1xRawRep1.bigWig
Named Annotation GSM803510_hg19_wgEncodeHaibTfbsGm12878Ets1Pcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803510_hg19_wgEncodeHaibTfbsGm12878Ets1Pcr1xPkRep1.broadPeak.gz 117.8 Kb (ftp)(http) BROADPEAK
GSM803510_hg19_wgEncodeHaibTfbsGm12878Ets1Pcr1xPkRep1V2.broadPeak.gz 19.6 Kb (ftp)(http) BROADPEAK
GSM803510_hg19_wgEncodeHaibTfbsGm12878Ets1Pcr1xPkRep2.broadPeak.gz 117.8 Kb (ftp)(http) BROADPEAK
GSM803510_hg19_wgEncodeHaibTfbsGm12878Ets1Pcr1xPkRep2V2.broadPeak.gz 54.3 Kb (ftp)(http) BROADPEAK
GSM803510_hg19_wgEncodeHaibTfbsGm12878Ets1Pcr1xRawRep1.bigWig 9.9 Mb (ftp)(http) BIGWIG
GSM803510_hg19_wgEncodeHaibTfbsGm12878Ets1Pcr1xRawRep2.bigWig 5.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap