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Sample GSM803508 Query DataSets for GSM803508
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_ATF3_PCR1x
Sample type SRA
 
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the C-terminus of ATF3 of human origin. Antibody Target: ATF3
antibody targetdescription: Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-188
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL1613
labexpid: SL1508,SL1269
replicate: 1,2
softwareversion: MACS
antibody targetdescription: Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-188
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL1613
labexpid: SL1269
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100553
BioSample SAMN00738470
Named Annotation GSM803508_hg19_wgEncodeHaibTfbsGm12878Atf3Pcr1xRawRep1.bigWig
Named Annotation GSM803508_hg19_wgEncodeHaibTfbsGm12878Atf3Pcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803508_hg19_wgEncodeHaibTfbsGm12878Atf3Pcr1xPkRep1.broadPeak.gz 32.1 Kb (ftp)(http) BROADPEAK
GSM803508_hg19_wgEncodeHaibTfbsGm12878Atf3Pcr1xPkRep2.broadPeak.gz 40.0 Kb (ftp)(http) BROADPEAK
GSM803508_hg19_wgEncodeHaibTfbsGm12878Atf3Pcr1xRawRep1.bigWig 19.0 Mb (ftp)(http) BIGWIG
GSM803508_hg19_wgEncodeHaibTfbsGm12878Atf3Pcr1xRawRep2.bigWig 4.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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