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Sample GSM803500 Query DataSets for GSM803500
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_HepG2_JunD_PCR1x
Sample type SRA
Source name HepG2
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: hepatocellular carcinoma
antibody antibodydescription: rabbit polyclonal IgG. Antibody Target: JunD
antibody targetdescription: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-74
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL593
labexpid: SL635,SL629
labversion: SL635,SL629
replicate: 1,2
softwareversion: MACS
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-74
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL593
labexpid: SL635
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100545
BioSample SAMN00738462
Named Annotation GSM803500_hg19_wgEncodeHaibTfbsHepg2JundPcr1xRawRep1.bigWig
Named Annotation GSM803500_hg19_wgEncodeHaibTfbsHepg2JundPcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803500_hg19_wgEncodeHaibTfbsHepg2JundPcr1xPkRep1.broadPeak.gz 343.9 Kb (ftp)(http) BROADPEAK
GSM803500_hg19_wgEncodeHaibTfbsHepg2JundPcr1xPkRep2.broadPeak.gz 471.0 Kb (ftp)(http) BROADPEAK
GSM803500_hg19_wgEncodeHaibTfbsHepg2JundPcr1xRawRep1.bigWig 19.5 Mb (ftp)(http) BIGWIG
GSM803500_hg19_wgEncodeHaibTfbsHepg2JundPcr1xRawRep2.bigWig 41.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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