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Sample GSM803499 Query DataSets for GSM803499
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_HepG2_p300_v041610.1
Sample type SRA
Source name HepG2
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: hepatocellular carcinoma
antibody antibodydescription: Rabbit Polyclonal. Antibody Target: P300
antibody targetdescription: EP300(c-20)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-585
controlid: SL1781
labexpid: SL3644,SL3154
replicate: 1,2
softwareversion: MACS
antibody antibodydescription: Rabbit Polyclonal
antibody targetdescription: EP300(c-20)
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-585
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL1781
labexpid: SL3154
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100544
BioSample SAMN00738461
Named Annotation GSM803499_hg19_wgEncodeHaibTfbsHepg2P300V0416101RawRep1.bigWig
Named Annotation GSM803499_hg19_wgEncodeHaibTfbsHepg2P300V0416101RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803499_hg19_wgEncodeHaibTfbsHepg2P300V0416101PkRep1.broadPeak.gz 333.0 Kb (ftp)(http) BROADPEAK
GSM803499_hg19_wgEncodeHaibTfbsHepg2P300V0416101PkRep2.broadPeak.gz 398.8 Kb (ftp)(http) BROADPEAK
GSM803499_hg19_wgEncodeHaibTfbsHepg2P300V0416101RawRep1.bigWig 22.0 Mb (ftp)(http) BIGWIG
GSM803499_hg19_wgEncodeHaibTfbsHepg2P300V0416101RawRep2.bigWig 25.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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