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Sample GSM803484 Query DataSets for GSM803484
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_H1-hESC_Pol2-4H8_v041610.2
Sample type SRA
 
Source name H1-hESC
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL2
antibody targetdescription: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes
antibody vendorname: abcam
antibody vendorid: ab5408
controlid: SL969
labexpid: SL979,SL1051
replicate: 1,2
cell sex: M
antibody: Pol2-4H8
antibody antibodydescription: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade
antibody targetdescription: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes
antibody vendorname: Abcam
antibody vendorid: ab5408
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.2
protocol description: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid: SL969
labexpid: SL979
replicate: 1
replicate description: tier 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol missing
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100529
BioSample SAMN00738446
Named Annotation GSM803484_hg19_wgEncodeHaibTfbsH1hescPol24h8V0416102RawRep1.bigWig
Named Annotation GSM803484_hg19_wgEncodeHaibTfbsH1hescPol24h8V0416102RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803484_hg19_wgEncodeHaibTfbsH1hescPol24h8V0416102PkRep1.broadPeak.gz 653.6 Kb (ftp)(http) BROADPEAK
GSM803484_hg19_wgEncodeHaibTfbsH1hescPol24h8V0416102PkRep2.broadPeak.gz 1.3 Mb (ftp)(http) BROADPEAK
GSM803484_hg19_wgEncodeHaibTfbsH1hescPol24h8V0416102RawRep1.bigWig 41.6 Mb (ftp)(http) BIGWIG
GSM803484_hg19_wgEncodeHaibTfbsH1hescPol24h8V0416102RawRep2.bigWig 68.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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