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Sample GSM803483 Query DataSets for GSM803483
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_HepG2_BHLHE40_v041610.1
Sample type SRA
 
Source name HepG2
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: hepatocellular carcinoma
antibody antibodydescription: Mouse monoclonal. Dec-1(S-8) is an IgG2b antibody raised against recombinant DEC1 of human origin. Recommended for detection of DEC1 of mouse and human origin by WB, IP and ELISA. Antibody Target: BHLHE40
antibody targetdescription: This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differe
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-101023
controlid: SL1781,SL593
labexpid: SL3460,SL1059
replicate: 1,2
softwareversion: MACS
antibody antibodydescription: Dec-1(S-8) is a mouse monoclonal IgG2b antibody raised against recombinant DEC1 of human origin. Recommended for detection of DEC1 of m and h origin by WB, IP and ELISA.
antibody targetdescription: This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differe
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-101023
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL593
labexpid: SL1059
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100528
BioSample SAMN00738445
Named Annotation GSM803483_hg19_wgEncodeHaibTfbsHepg2Bhlhe40V0416101RawRep1.bigWig
Named Annotation GSM803483_hg19_wgEncodeHaibTfbsHepg2Bhlhe40V0416101RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803483_hg19_wgEncodeHaibTfbsHepg2Bhlhe40V0416101PkRep1.broadPeak.gz 85.1 Kb (ftp)(http) BROADPEAK
GSM803483_hg19_wgEncodeHaibTfbsHepg2Bhlhe40V0416101PkRep2.broadPeak.gz 22.7 Kb (ftp)(http) BROADPEAK
GSM803483_hg19_wgEncodeHaibTfbsHepg2Bhlhe40V0416101RawRep1.bigWig 27.1 Mb (ftp)(http) BIGWIG
GSM803483_hg19_wgEncodeHaibTfbsHepg2Bhlhe40V0416101RawRep2.bigWig 5.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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