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Sample GSM803478 Query DataSets for GSM803478
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_HeLa-S3_NRSF_PCR1x
Sample type SRA
Source name HeLa-S3
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell lineage: ectoderm
antibody antibodydescription: Mouse monoclonal. Antibody Target: NRSF
antibody targetdescription: Neuron-restrictive silencer transcription factor
antibody vendorname: Dr. David Anderson at Caltech
antibody vendorid: (Made by Protein Expression Center:
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL592
labexpid: SL679,SL1322
replicate: 1,2
softwareversion: MACS
antibody vendorname: David Anderson, Caltech
antibody vendorid: (Made by Protein Expression Center:
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL592
labexpid: SL679
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100523
BioSample SAMN00738440
Named Annotation GSM803478_hg19_wgEncodeHaibTfbsHelas3NrsfPcr1xRawRep1.bigWig
Named Annotation GSM803478_hg19_wgEncodeHaibTfbsHelas3NrsfPcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803478_hg19_wgEncodeHaibTfbsHelas3NrsfPcr1xPkRep1.broadPeak.gz 152.7 Kb (ftp)(http) BROADPEAK
GSM803478_hg19_wgEncodeHaibTfbsHelas3NrsfPcr1xPkRep2.broadPeak.gz 190.3 Kb (ftp)(http) BROADPEAK
GSM803478_hg19_wgEncodeHaibTfbsHelas3NrsfPcr1xRawRep1.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSM803478_hg19_wgEncodeHaibTfbsHelas3NrsfPcr1xRawRep2.bigWig 10.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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