GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM803477 Query DataSets for GSM803477
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_SRF_v041610.1
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Rabbit polyclonal. Antibody Target: SRF
antibody targetdescription: Serum response transcription factor
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-335
controlid: SL1613
labexpid: SL3578,SL3827
replicate: 1,2
softwareversion: MACS
antibody antibodydescription: Rabbit polyclonal
antibody targetdescription: Serum response transcription factor
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-335
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL1613
labexpid: SL3578
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100522
BioSample SAMN00738439
Named Annotation GSM803477_hg19_wgEncodeHaibTfbsGm12878SrfV0416101RawRep1.bigWig
Named Annotation GSM803477_hg19_wgEncodeHaibTfbsGm12878SrfV0416101RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803477_hg19_wgEncodeHaibTfbsGm12878SrfV0416101PkRep1.broadPeak.gz 97.6 Kb (ftp)(http) BROADPEAK
GSM803477_hg19_wgEncodeHaibTfbsGm12878SrfV0416101PkRep2.broadPeak.gz 140.4 Kb (ftp)(http) BROADPEAK
GSM803477_hg19_wgEncodeHaibTfbsGm12878SrfV0416101RawRep1.bigWig 16.2 Mb (ftp)(http) BIGWIG
GSM803477_hg19_wgEncodeHaibTfbsGm12878SrfV0416101RawRep2.bigWig 18.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap