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Sample GSM803446 Query DataSets for GSM803446
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_K562_YY1_(SC-281)_v041610.1
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1
antibody targetdescription: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-281
controlid: SL2455,SL2455
labexpid: SL2203,SL2944
softwareversion: MACS
cell sex: F
antibody: YY1_(SC-281)
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1
antibody targetdescription: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-281
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL2455,SL2455
labexpid: SL2203,SL2944
replicate: 1,2
softwareversion: MACS
Biomaterial provider ATCC
Treatment protocol None
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100491
BioSample SAMN00738408
Named Annotation GSM803446_hg19_wgEncodeHaibTfbsK562Yy1sc281V0416101RawRep1.bigWig
Named Annotation GSM803446_hg19_wgEncodeHaibTfbsK562Yy1sc281V0416101RawRep2.bigWig
Named Annotation GSM803446_hg19_wgEncodeHaibTfbsK562Yy1V0416101RawRep1.bigWig
Named Annotation GSM803446_hg19_wgEncodeHaibTfbsK562Yy1V0416101RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803446_hg19_wgEncodeHaibTfbsK562Yy1V0416101PkRep1.broadPeak.gz 374.8 Kb (ftp)(http) BROADPEAK
GSM803446_hg19_wgEncodeHaibTfbsK562Yy1V0416101PkRep2.broadPeak.gz 117.8 Kb (ftp)(http) BROADPEAK
GSM803446_hg19_wgEncodeHaibTfbsK562Yy1V0416101RawRep1.bigWig 25.4 Mb (ftp)(http) BIGWIG
GSM803446_hg19_wgEncodeHaibTfbsK562Yy1V0416101RawRep2.bigWig 4.2 Mb (ftp)(http) BIGWIG
GSM803446_hg19_wgEncodeHaibTfbsK562Yy1sc281V0416101PkRep1.broadPeak.gz 374.8 Kb (ftp)(http) BROADPEAK
GSM803446_hg19_wgEncodeHaibTfbsK562Yy1sc281V0416101PkRep2.broadPeak.gz 117.8 Kb (ftp)(http) BROADPEAK
GSM803446_hg19_wgEncodeHaibTfbsK562Yy1sc281V0416101RawRep1.bigWig 25.4 Mb (ftp)(http) BIGWIG
GSM803446_hg19_wgEncodeHaibTfbsK562Yy1sc281V0416101RawRep2.bigWig 4.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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