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Sample GSM803425 Query DataSets for GSM803425
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_H1-hESC_SRF_PCR1x
Sample type SRA
Source name H1-hESC
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Rabbit polyclonal. Antibody Target: SRF
antibody targetdescription: Serum response transcription factor
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-335
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL1398
labexpid: SL1483,SL1659
replicate: 1,2
softwareversion: MACS
antibody antibodydescription: Rabbit polyclonal
antibody targetdescription: Serum response transcription factor
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-335
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL1398
labexpid: SL1483
replicate: 1
replicate description: tier 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol missing
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100470
BioSample SAMN00738387
Named Annotation GSM803425_hg19_wgEncodeHaibTfbsH1hescSrfPcr1xRawRep1.bigWig
Named Annotation GSM803425_hg19_wgEncodeHaibTfbsH1hescSrfPcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803425_hg19_wgEncodeHaibTfbsH1hescSrfPcr1xPkRep1.broadPeak.gz 64.9 Kb (ftp)(http) BROADPEAK
GSM803425_hg19_wgEncodeHaibTfbsH1hescSrfPcr1xPkRep2.broadPeak.gz 49.5 Kb (ftp)(http) BROADPEAK
GSM803425_hg19_wgEncodeHaibTfbsH1hescSrfPcr1xRawRep1.bigWig 6.2 Mb (ftp)(http) BIGWIG
GSM803425_hg19_wgEncodeHaibTfbsH1hescSrfPcr1xRawRep2.bigWig 6.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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