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Sample GSM803424 Query DataSets for GSM803424
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_H1-hESC_GABP_PCR1x
Sample type SRA
 
Source name H1-hESC
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP
antibody targetdescription: The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-28312
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL1398
labexpid: SL1660,SL1518
replicate: 1,2
softwareversion: MACS
antibody antibodydescription: Mouse monoclonal, GABPa(G-1), IgG1
antibody targetdescription: The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-28312
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL1398
labexpid: SL1518
replicate: 1
replicate description: tier 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol missing
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100469
BioSample SAMN00738386
Named Annotation GSM803424_hg19_wgEncodeHaibTfbsH1hescGabpPcr1xRawRep1.bigWig
Named Annotation GSM803424_hg19_wgEncodeHaibTfbsH1hescGabpPcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803424_hg19_wgEncodeHaibTfbsH1hescGabpPcr1xPkRep1.broadPeak.gz 254.3 Kb (ftp)(http) BROADPEAK
GSM803424_hg19_wgEncodeHaibTfbsH1hescGabpPcr1xPkRep2.broadPeak.gz 76.6 Kb (ftp)(http) BROADPEAK
GSM803424_hg19_wgEncodeHaibTfbsH1hescGabpPcr1xRawRep1.bigWig 13.6 Mb (ftp)(http) BIGWIG
GSM803424_hg19_wgEncodeHaibTfbsH1hescGabpPcr1xRawRep2.bigWig 4.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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