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Sample GSM803420 Query DataSets for GSM803420
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_MEF2C_(SC-13268)_v041610.1
Sample type SRA
 
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Goat polyclonal IgG, epitope mapping near the C-terminus of MEF2C of human origin. Antibody Target: MEF2C
antibody targetdescription: This locus encodes a member of the MADS box transcription enhancer factor 2 (MEF2) family of proteins, which play a role in myogenesis. The encoded protein, MEF2 polypeptide C, has both trans-activating and DNA binding activities. This protein may play a role in maintaining the differentiated state of muscle cells. Mutations and deletions at this locus have been associated with severe mental retardation, stereotypic movements, epilepsy, and cerebral malformation. Alternatively spliced transcript variants have been described. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-13268
controlid: SL1613
labexpid: SL1654,SL2127
replicate: 1,2
softwareversion: MACS
antibody antibodydescription: Goat polyclonal IgG, epitope mapping near the C-terminus of MEF2C of human origin.
antibody targetdescription: This locus encodes a member of the MADS box transcription enhancer factor 2 (MEF2) family of proteins, which play a role in myogenesis. The encoded protein, MEF2 polypeptide C, has both trans-activating and DNA binding activities. This protein may play a role in maintaining the differentiated state of muscle cells. Mutations and deletions at this locus have been associated with severe mental retardation, stereotypic movements, epilepsy, and cerebral malformation. Alternatively spliced transcript variants have been described. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-13268
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL1613
labexpid: SL1654
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100465
BioSample SAMN00738382
Named Annotation GSM803420_hg19_wgEncodeHaibTfbsGm12878Mef2csc13268V0416101RawRep1.bigWig
Named Annotation GSM803420_hg19_wgEncodeHaibTfbsGm12878Mef2csc13268V0416101RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803420_hg19_wgEncodeHaibTfbsGm12878Mef2csc13268V0416101PkRep1.broadPeak.gz 15.6 Kb (ftp)(http) BROADPEAK
GSM803420_hg19_wgEncodeHaibTfbsGm12878Mef2csc13268V0416101PkRep2.broadPeak.gz 135.4 Kb (ftp)(http) BROADPEAK
GSM803420_hg19_wgEncodeHaibTfbsGm12878Mef2csc13268V0416101RawRep1.bigWig 3.6 Mb (ftp)(http) BIGWIG
GSM803420_hg19_wgEncodeHaibTfbsGm12878Mef2csc13268V0416101RawRep2.bigWig 9.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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