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Sample GSM803416 Query DataSets for GSM803416
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_Rad21_v041610.1
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Rabbit polyclonal. Antibody Target: RAD21
antibody targetdescription: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14
antibody vendorname: abcam
antibody vendorid: ab992
controlid: SL1613
labexpid: SL3933,SL3934
replicate: 1,2
softwareversion: MACS
antibody antibodydescription: Rabbit polyclonal
antibody targetdescription: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14
antibody vendorname: Abcam
antibody vendorid: ab992
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL1613
labexpid: SL3933
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100461
BioSample SAMN00738378
Named Annotation GSM803416_hg19_wgEncodeHaibTfbsGm12878Rad21V0416101RawRep1.bigWig
Named Annotation GSM803416_hg19_wgEncodeHaibTfbsGm12878Rad21V0416101RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803416_hg19_wgEncodeHaibTfbsGm12878Rad21V0416101PkRep1.broadPeak.gz 509.8 Kb (ftp)(http) BROADPEAK
GSM803416_hg19_wgEncodeHaibTfbsGm12878Rad21V0416101PkRep2.broadPeak.gz 658.5 Kb (ftp)(http) BROADPEAK
GSM803416_hg19_wgEncodeHaibTfbsGm12878Rad21V0416101RawRep1.bigWig 20.9 Mb (ftp)(http) BIGWIG
GSM803416_hg19_wgEncodeHaibTfbsGm12878Rad21V0416101RawRep2.bigWig 41.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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