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Sample GSM803410 Query DataSets for GSM803410
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_K562_Pol2_v041610.1
Sample type SRA
Source name K562
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription: RNA Polymerase II
antibody vendorname: Covance
antibody vendorid: MMS-126R
controlid: SL2455
labexpid: SL3819,SL3820
replicate: 1,2
softwareversion: MACS
antibody: Pol2
antibody antibodydescription: mouse monoclonal, clone 8WG16
antibody targetdescription: RNA Polymerase II
antibody vendorname: Covance
antibody vendorid: MMS-126R
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL2455
labexpid: SL3819
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100455
BioSample SAMN00738372
Named Annotation GSM803410_hg19_wgEncodeHaibTfbsK562Pol2V0416101RawRep1.bigWig
Named Annotation GSM803410_hg19_wgEncodeHaibTfbsK562Pol2V0416101RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803410_hg19_wgEncodeHaibTfbsK562Pol2V0416101PkRep1.broadPeak.gz 743.9 Kb (ftp)(http) BROADPEAK
GSM803410_hg19_wgEncodeHaibTfbsK562Pol2V0416101PkRep2.broadPeak.gz 874.2 Kb (ftp)(http) BROADPEAK
GSM803410_hg19_wgEncodeHaibTfbsK562Pol2V0416101RawRep1.bigWig 74.1 Mb (ftp)(http) BIGWIG
GSM803410_hg19_wgEncodeHaibTfbsK562Pol2V0416101RawRep2.bigWig 80.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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