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Sample GSM803406 Query DataSets for GSM803406
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_YY1_(SC-281)_PCR1x
Sample type SRA
 
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1
antibody targetdescription: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-281
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL1613,SL1394
labexpid: SL1475,SL2129
replicate: 1,2
softwareversion: MACS
antibody targetdescription: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-281
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL1394
labexpid: SL1475
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100451
BioSample SAMN00738368
Named Annotation GSM803406_hg19_wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xRawRep1.bigWig
Named Annotation GSM803406_hg19_wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803406_hg19_wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xPkRep1.broadPeak.gz 650.8 Kb (ftp)(http) BROADPEAK
GSM803406_hg19_wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xPkRep2.broadPeak.gz 406.5 Kb (ftp)(http) BROADPEAK
GSM803406_hg19_wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xRawRep1.bigWig 25.1 Mb (ftp)(http) BIGWIG
GSM803406_hg19_wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xRawRep2.bigWig 23.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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