NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM803405 Query DataSets for GSM803405
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_H1-hESC_SIX5_PCR1x
Sample type SRA
 
Source name H1-hESC
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Six5 (K-20) Goat polyclonal IgG, 200?g/ml. Epitope mapping near the C-terminus of Six5 of human origin. Recommended for detection of Six5 of human origin by WB, IF and ELISA. Antibody Target: SIX5
antibody targetdescription: The protein encoded by this gene is a homeodomain-containing transcription factor that appears to function in the regulation of organogenesis. This gene is located downstream of the dystrophia myotonica-protein kinase gene. Mutations in this geneare a cause of branchiootorenal syndrome type 2.
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-55706
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL1398
labexpid: SL1162,SL1317
replicate: 1,2
softwareversion: MACS
antibody antibodydescription: Six5 (K-20) Goat polyclonal IgG, 200?g/ml. Epitope mapping near the C-terminus of Six5 of human origin. Recommended for detection of Six5 of human origin by WB, IF and ELISA
antibody targetdescription: The protein encoded by this gene is a homeodomain-containing transcription factor that appears to function in the regulation of organogenesis. This gene is located downstream of the dystrophia myotonica-protein kinase gene. Mutations in this geneare a cause of branchiootorenal syndrome type 2.
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-55706
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL1398
labexpid: SL1162
replicate: 1
replicate description: tier 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol missing
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100450
BioSample SAMN00738367
Named Annotation GSM803405_hg19_wgEncodeHaibTfbsH1hescSix5Pcr1xRawRep1.bigWig
Named Annotation GSM803405_hg19_wgEncodeHaibTfbsH1hescSix5Pcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803405_hg19_wgEncodeHaibTfbsH1hescSix5Pcr1xPkRep1.broadPeak.gz 46.9 Kb (ftp)(http) BROADPEAK
GSM803405_hg19_wgEncodeHaibTfbsH1hescSix5Pcr1xPkRep2.broadPeak.gz 34.8 Kb (ftp)(http) BROADPEAK
GSM803405_hg19_wgEncodeHaibTfbsH1hescSix5Pcr1xRawRep1.bigWig 3.2 Mb (ftp)(http) BIGWIG
GSM803405_hg19_wgEncodeHaibTfbsH1hescSix5Pcr1xRawRep2.bigWig 3.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap