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Sample GSM803404 Query DataSets for GSM803404
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_HepG2_HNF4G_(SC-6558)_v041610.1
Sample type SRA
 
Source name HepG2
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: hepatocellular carcinoma
antibody antibodydescription: Goat polyclonal IgG, epitope mapping at the C-terminus of HNF4G of human origin. Antibody Target: HNF4G
antibody targetdescription: Hepatocyte nuclear factor 4 gamma (HNF4G) also known as NR2A2 (nuclear receptor subfamily 2, group A, member 2) is a nuclear receptor that in humans is encoded by the HNF4G gene
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-6558
controlid: SL1781
labexpid: SL3178,SL3463
replicate: 1,2
softwareversion: MACS
antibody antibodydescription: Goat polyclonal IgG, epitope mapping at the C-terminus of HNF4G of human origin.
antibody targetdescription: Hepatocyte nuclear factor 4 gamma (HNF4G) also known as NR2A2 (nuclear receptor subfamily 2, group A, member 2) is a nuclear receptor that in humans is encoded by the HNF4G gene
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-6558
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL1781
labexpid: SL3178
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100449
BioSample SAMN00738366
Named Annotation GSM803404_hg19_wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101RawRep1.bigWig
Named Annotation GSM803404_hg19_wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803404_hg19_wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101PkRep1.broadPeak.gz 354.0 Kb (ftp)(http) BROADPEAK
GSM803404_hg19_wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101PkRep2.broadPeak.gz 106.9 Kb (ftp)(http) BROADPEAK
GSM803404_hg19_wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101RawRep1.bigWig 25.2 Mb (ftp)(http) BIGWIG
GSM803404_hg19_wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101RawRep2.bigWig 12.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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