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Sample GSM803392 Query DataSets for GSM803392
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_ZBTB33_PCR1x
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Kaiso (6F8) Mouse monoclonal IgG1. Raised against amino acids 1-504 representing full length Kaiso of human origin. Recommended for detection of Kaiso of m, r, h, canine and chicken origin by WB, IP, IF and ELISA. Antibody Target: ZBTB33
antibody targetdescription: KAISO is a transcriptional regulator that binds, via its zinc fingers, to DNA sequences containing methylated CGCG or to the consensus KAISO-binding site (KBS) TCCTGCNA
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-23871
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL516,SL517
labexpid: SL814,SL923
labversion: 8,7
replicate: 1,2
softwareversion: MACS
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-23871
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL516
labexpid: SL814
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100437
BioSample SAMN00738354
Named Annotation GSM803392_hg19_wgEncodeHaibTfbsGm12878Zbtb33Pcr1xRawRep1.bigWig
Named Annotation GSM803392_hg19_wgEncodeHaibTfbsGm12878Zbtb33Pcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803392_hg19_wgEncodeHaibTfbsGm12878Zbtb33Pcr1xPkRep1.broadPeak.gz 166.5 Kb (ftp)(http) BROADPEAK
GSM803392_hg19_wgEncodeHaibTfbsGm12878Zbtb33Pcr1xPkRep2.broadPeak.gz 144.6 Kb (ftp)(http) BROADPEAK
GSM803392_hg19_wgEncodeHaibTfbsGm12878Zbtb33Pcr1xRawRep1.bigWig 11.8 Mb (ftp)(http) BIGWIG
GSM803392_hg19_wgEncodeHaibTfbsGm12878Zbtb33Pcr1xRawRep2.bigWig 9.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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