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Sample GSM803390 Query DataSets for GSM803390
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_IRF4_(SC-6059)_PCR1x
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Goat polyclonal IgG, epitope mapping at the C-terminus of IRF-4 of mouse origin. Antibody Target: IRF4
antibody targetdescription: The protein encoded by this gene belongs to the IRF (interferon regulatory factor) family. It functions as a lymphocyte specific transcription factor and negatively regulates TLR signaling by selectively competing with IRF5. A chromosomal translocation involving this gene and the IgH locus, t(6;14)(p25;q32), may be a cause of multiple myeloma (RefSeq).
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-6059
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL516,SL517
labexpid: SL951,SL838
labversion: 8,7
replicate: 1,2
softwareversion: MACS
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-6059
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL516
labexpid: SL838
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100435
BioSample SAMN00738352
Named Annotation GSM803390_hg19_wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xRawRep1.bigWig
Named Annotation GSM803390_hg19_wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803390_hg19_wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xPkRep1.broadPeak.gz 331.5 Kb (ftp)(http) BROADPEAK
GSM803390_hg19_wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xPkRep2.broadPeak.gz 392.5 Kb (ftp)(http) BROADPEAK
GSM803390_hg19_wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xRawRep1.bigWig 15.4 Mb (ftp)(http) BIGWIG
GSM803390_hg19_wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xRawRep2.bigWig 20.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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