GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM803389 Query DataSets for GSM803389
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_TCF12_PCR1x
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: HEB (A-20) Rabbit polyclonal IgG, 200 ?g/ml. Epitope mapping within the C-terminus of HEB of human origin. Antibody Target: TCF12
antibody targetdescription: The protein encoded by this gene is a member of the basic helix-loop-helix (bHLH) E-protein family that recognizes the consensus binding site (E-box) CANNTG. This encoded protein is expressed in many tissues, among them skeletal muscle, thymus, B- and T-cells, and may participate in regulating lineage-specific gene expression through the formation of heterodimers with other bHLH E-proteins. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined.
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-357
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL516,SL517
labexpid: SL673,SL1019
labversion: SL673
replicate: 1,2
softwareversion: MACS
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-357
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL516
labexpid: SL673
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100434
BioSample SAMN00738351
Named Annotation GSM803389_hg19_wgEncodeHaibTfbsGm12878Tcf12Pcr1xRawRep1.bigWig
Named Annotation GSM803389_hg19_wgEncodeHaibTfbsGm12878Tcf12Pcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803389_hg19_wgEncodeHaibTfbsGm12878Tcf12Pcr1xPkRep1.broadPeak.gz 528.1 Kb (ftp)(http) BROADPEAK
GSM803389_hg19_wgEncodeHaibTfbsGm12878Tcf12Pcr1xPkRep2.broadPeak.gz 367.2 Kb (ftp)(http) BROADPEAK
GSM803389_hg19_wgEncodeHaibTfbsGm12878Tcf12Pcr1xRawRep1.bigWig 28.8 Mb (ftp)(http) BIGWIG
GSM803389_hg19_wgEncodeHaibTfbsGm12878Tcf12Pcr1xRawRep2.bigWig 18.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap