|
Status |
Public on Sep 29, 2011 |
Title |
HudsonAlpha_ChipSeq_GM12878_BCL11A_PCR1x |
Sample type |
SRA |
|
|
Source name |
GM12878
|
Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus antibody antibodydescription: Mouse monoclonal [18B12DE6] to Ctip1. Raised against a cocktail of BCL11A fusion proteins. Reacts with human and mouse. Tested for ICC/IF, IHC-P, IP, WB. Antibody Target: BCL11A antibody targetdescription: This gene encodes a C2H2 type zinc-finger protein by its similarity to the mouse Bcl11a/Evi9 protein. Functions as a myeloid and B-cell proto-oncogene. May play important roles in leukemogenesis and hematopoiesis. An essential factor in lymphopoiesis,is required for B-cell formation in fetal liver. May function as a modulator of the transcriptional repression activity of ARP1 (By similarity) antibody vendorname: abcam antibody vendorid: ab19489 protocol description: one 15-cycle round of PCR (Myers) controlid: SL516,SL517 labexpid: SL976,SL650 labversion: 8,5 replicate: 1,2 softwareversion: MACS antibody vendorname: Abcam antibody vendorid: ab19489 treatment: None treatment description: No special treatment or protocol applies protocol: PCR1x protocol description: 1-cycle of PCR (Myers) controlid: SL516 labexpid: SL650 replicate: 1 replicate description: tier 1
|
Biomaterial provider |
Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
|
Treatment protocol |
None
|
Growth protocol |
GM12878_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
|
|
Submission date |
Sep 28, 2011 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (2) |
GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
SRA |
SRX100433 |
BioSample |
SAMN00738350 |
Named Annotation |
GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep1.bigWig |
Named Annotation |
GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep2.bigWig |