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Sample GSM803388 Query DataSets for GSM803388
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_BCL11A_PCR1x
Sample type SRA
 
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Mouse monoclonal [18B12DE6] to Ctip1. Raised against a cocktail of BCL11A fusion proteins. Reacts with human and mouse. Tested for ICC/IF, IHC-P, IP, WB. Antibody Target: BCL11A
antibody targetdescription: This gene encodes a C2H2 type zinc-finger protein by its similarity to the mouse Bcl11a/Evi9 protein. Functions as a myeloid and B-cell proto-oncogene. May play important roles in leukemogenesis and hematopoiesis. An essential factor in lymphopoiesis,is required for B-cell formation in fetal liver. May function as a modulator of the transcriptional repression activity of ARP1 (By similarity)
antibody vendorname: abcam
antibody vendorid: ab19489
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL516,SL517
labexpid: SL976,SL650
labversion: 8,5
replicate: 1,2
softwareversion: MACS
antibody vendorname: Abcam
antibody vendorid: ab19489
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL516
labexpid: SL650
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100433
BioSample SAMN00738350
Named Annotation GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep1.bigWig
Named Annotation GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xPkRep1.broadPeak.gz 327.6 Kb (ftp)(http) BROADPEAK
GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xPkRep2.broadPeak.gz 384.6 Kb (ftp)(http) BROADPEAK
GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep1.bigWig 18.0 Mb (ftp)(http) BIGWIG
GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep2.bigWig 22.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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