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Sample GSM803388 Query DataSets for GSM803388
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_BCL11A_PCR1x
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Mouse monoclonal [18B12DE6] to Ctip1. Raised against a cocktail of BCL11A fusion proteins. Reacts with human and mouse. Tested for ICC/IF, IHC-P, IP, WB. Antibody Target: BCL11A
antibody targetdescription: This gene encodes a C2H2 type zinc-finger protein by its similarity to the mouse Bcl11a/Evi9 protein. Functions as a myeloid and B-cell proto-oncogene. May play important roles in leukemogenesis and hematopoiesis. An essential factor in lymphopoiesis,is required for B-cell formation in fetal liver. May function as a modulator of the transcriptional repression activity of ARP1 (By similarity)
antibody vendorname: abcam
antibody vendorid: ab19489
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL516,SL517
labexpid: SL976,SL650
labversion: 8,5
replicate: 1,2
softwareversion: MACS
antibody vendorname: Abcam
antibody vendorid: ab19489
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL516
labexpid: SL650
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100433
BioSample SAMN00738350
Named Annotation GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep1.bigWig
Named Annotation GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xPkRep1.broadPeak.gz 327.6 Kb (ftp)(http) BROADPEAK
GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xPkRep2.broadPeak.gz 384.6 Kb (ftp)(http) BROADPEAK
GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep1.bigWig 18.0 Mb (ftp)(http) BIGWIG
GSM803388_hg19_wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep2.bigWig 22.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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