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Sample GSM803386 Query DataSets for GSM803386
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_EBF1_(SC-137065)_PCR1x
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Mouse monoclonal IgG, raised against a.a. 1-300 mapping at the N-terminus of EBF of human origin. Antibody Target: EBF1
antibody targetdescription: Early B-cell factor 1. Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3' (By similarity).
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-137065
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL516,SL517
labexpid: SL988,SL745
labversion: 8,6
replicate: 1,2
softwareversion: MACS
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-137065
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL516
labexpid: SL745
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100431
BioSample SAMN00738348
Named Annotation GSM803386_hg19_wgEncodeHaibTfbsGm12878Ebf1sc137065Pcr1xRawRep1.bigWig
Named Annotation GSM803386_hg19_wgEncodeHaibTfbsGm12878Ebf1sc137065Pcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803386_hg19_wgEncodeHaibTfbsGm12878Ebf1sc137065Pcr1xRawRep1.bigWig 44.6 Mb (ftp)(http) BIGWIG
GSM803386_hg19_wgEncodeHaibTfbsGm12878Ebf1sc137065Pcr1xRawRep2.bigWig 35.9 Mb (ftp)(http) BIGWIG
GSM803386_hg19_wgEncodeHaibTfbsGm12878Ebfsc137065Pcr1xPkRep1.broadPeak.gz 624.9 Kb (ftp)(http) BROADPEAK
GSM803386_hg19_wgEncodeHaibTfbsGm12878Ebfsc137065Pcr1xPkRep2.broadPeak.gz 776.9 Kb (ftp)(http) BROADPEAK
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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