GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM803349 Query DataSets for GSM803349
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_NRSF_PCR2x
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Mouse monoclonal. Antibody Target: NRSF
antibody targetdescription: Neuron-restrictive silencer transcription factor
antibody vendorname: Dr. David Anderson at Caltech
antibody vendorid: (Made by Protein Expression Center:
protocol description: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)
controlid: SL217,SL218
labexpid: SL202,SL204
labversion: PCR2x
labversion description: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)
replicate: 1,2
softwareversion: MACS
antibody vendorid: (Made by Protein Expression Center:
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR2x
protocol description: 2-cycles of PCR (Myers)
controlid: SL217
labexpid: SL202
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100394
BioSample SAMN00738311
Named Annotation GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep1.bigWig
Named Annotation GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xPkRep1.broadPeak.gz 86.3 Kb (ftp)(http) BROADPEAK
GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xPkRep2.broadPeak.gz 82.8 Kb (ftp)(http) BROADPEAK
GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep1.bigWig 21.3 Mb (ftp)(http) BIGWIG
GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep2.bigWig 18.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap