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Sample GSM803349 Query DataSets for GSM803349
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_NRSF_PCR2x
Sample type SRA
 
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Mouse monoclonal. Antibody Target: NRSF
antibody targetdescription: Neuron-restrictive silencer transcription factor
antibody vendorname: Dr. David Anderson at Caltech
antibody vendorid: (Made by Protein Expression Center: pec@caltech.edu)
protocol description: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)
controlid: SL217,SL218
labexpid: SL202,SL204
labversion: PCR2x
labversion description: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)
replicate: 1,2
softwareversion: MACS
antibody vendorid: (Made by Protein Expression Center: pec@caltech.edu)
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR2x
protocol description: 2-cycles of PCR (Myers)
controlid: SL217
labexpid: SL202
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100394
BioSample SAMN00738311
Named Annotation GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep1.bigWig
Named Annotation GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xPkRep1.broadPeak.gz 86.3 Kb (ftp)(http) BROADPEAK
GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xPkRep2.broadPeak.gz 82.8 Kb (ftp)(http) BROADPEAK
GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep1.bigWig 21.3 Mb (ftp)(http) BIGWIG
GSM803349_hg19_wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep2.bigWig 18.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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