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Sample GSM803345 Query DataSets for GSM803345
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_H1-hESC_HDAC2_(SC-6296)_v041610.2
Sample type SRA
 
Source name H1-hESC
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Goat polyclonal IgG, epitope mapping at the C-terminus of HDAC2 of human origin. Antibody Target: HDAC2
antibody targetdescription: This gene product belongs to the histone deacetylase family. Histone deacetylases act via the formation of large multiprotein complexes, and are responsible for the deacetylation of lysine residues at the N-terminal regions of core histones (H2A, H2B, H3 and H4). This protein forms transcriptional repressor complexes by associating with many different proteins, including YY1, a mammalian zinc-finger transcription factor. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-6296
controlid: SL1398
labexpid: SL3454,SL3935
replicate: 1,2
softwareversion: MACS
antibody: HDAC2_(SC-6296)
antibody antibodydescription: Goat polyclonal IgG, epitope mapping at the C-terminus of HDAC2 of human origin.
antibody targetdescription: This gene product belongs to the histone deacetylase family. Histone deacetylases act via the formation of large multiprotein complexes, and are responsible for the deacetylation of lysine residues at the N-terminal regions of core histones (H2A, H2B, H3 and H4). This protein forms transcriptional repressor complexes by associating with many different proteins, including YY1, a mammalian zinc-finger transcription factor. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-6296
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.2
protocol description: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid: SL1398
labexpid: SL3935
replicate: 1
replicate description: tier 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol missing
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100390
BioSample SAMN00738307
Named Annotation GSM803345_hg19_wgEncodeHaibTfbsH1hescHdac2sc6296V0416102RawRep1.bigWig
Named Annotation GSM803345_hg19_wgEncodeHaibTfbsH1hescHdac2sc6296V0416102RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803345_hg19_wgEncodeHaibTfbsH1hescHdac2sc6296V0416102PkRep1.broadPeak.gz 47.0 Kb (ftp)(http) BROADPEAK
GSM803345_hg19_wgEncodeHaibTfbsH1hescHdac2sc6296V0416102PkRep2.broadPeak.gz 139.9 Kb (ftp)(http) BROADPEAK
GSM803345_hg19_wgEncodeHaibTfbsH1hescHdac2sc6296V0416102RawRep1.bigWig 6.4 Mb (ftp)(http) BIGWIG
GSM803345_hg19_wgEncodeHaibTfbsH1hescHdac2sc6296V0416102RawRep2.bigWig 14.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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