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Sample GSM803344 Query DataSets for GSM803344
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_HepG2_NRSF_PCR2x
Sample type SRA
 
Source name HepG2
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: hepatocellular carcinoma
antibody antibodydescription: Mouse monoclonal. Antibody Target: NRSF
antibody targetdescription: Neuron-restrictive silencer transcription factor
antibody vendorname: Dr. David Anderson at Caltech
antibody vendorid: (Made by Protein Expression Center: pec@caltech.edu)
protocol description: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)
controlid: SL295,SL294
labexpid: SL274,SL273
replicate: 1,2
softwareversion: MACS
antibody targetdescription: Neuron-restrictive silencer transcription factor
antibody vendorname: David Anderson, Caltech
antibody vendorid: (Made by Protein Expression Center: pec@caltech.edu)
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR2x
protocol description: 2-cycles of PCR (Myers)
controlid: SL294
labexpid: SL273
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100389
BioSample SAMN00738306
Named Annotation GSM803344_hg19_wgEncodeHaibTfbsHepg2NrsfPcr2xRawRep1.bigWig
Named Annotation GSM803344_hg19_wgEncodeHaibTfbsHepg2NrsfPcr2xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803344_hg19_wgEncodeHaibTfbsHepg2NrsfPcr2xPkRep1.broadPeak.gz 54.1 Kb (ftp)(http) BROADPEAK
GSM803344_hg19_wgEncodeHaibTfbsHepg2NrsfPcr2xPkRep2.broadPeak.gz 74.1 Kb (ftp)(http) BROADPEAK
GSM803344_hg19_wgEncodeHaibTfbsHepg2NrsfPcr2xRawRep1.bigWig 14.3 Mb (ftp)(http) BIGWIG
GSM803344_hg19_wgEncodeHaibTfbsHepg2NrsfPcr2xRawRep2.bigWig 27.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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