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Sample GSM803343 Query DataSets for GSM803343
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_HepG2_GABP_PCR2x
Sample type SRA
Source name HepG2
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: hepatocellular carcinoma
antibody antibodydescription: Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP
antibody targetdescription: The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-28312
protocol description: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)
controlid: SL295,SL294
labexpid: SL275,SL276
labversion: SL275
replicate: 1,2
softwareversion: MACS
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-28312
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR2x
protocol description: 2-cycles of PCR (Myers)
controlid: SL294
labexpid: SL275
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100388
BioSample SAMN00738305
Named Annotation GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xRawRep1.bigWig
Named Annotation GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xPkRep1.broadPeak.gz 127.9 Kb (ftp)(http) BROADPEAK
GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xPkRep2.broadPeak.gz 110.0 Kb (ftp)(http) BROADPEAK
GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xRawRep1.bigWig 49.6 Mb (ftp)(http) BIGWIG
GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xRawRep2.bigWig 49.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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