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Sample GSM803343 Query DataSets for GSM803343
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_HepG2_GABP_PCR2x
Sample type SRA
 
Source name HepG2
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: hepatocellular carcinoma
antibody antibodydescription: Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP
antibody targetdescription: The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-28312
protocol description: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)
controlid: SL295,SL294
labexpid: SL275,SL276
labversion: SL275
replicate: 1,2
softwareversion: MACS
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-28312
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR2x
protocol description: 2-cycles of PCR (Myers)
controlid: SL294
labexpid: SL275
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX100388
BioSample SAMN00738305
Named Annotation GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xRawRep1.bigWig
Named Annotation GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xPkRep1.broadPeak.gz 127.9 Kb (ftp)(http) BROADPEAK
GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xPkRep2.broadPeak.gz 110.0 Kb (ftp)(http) BROADPEAK
GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xRawRep1.bigWig 49.6 Mb (ftp)(http) BIGWIG
GSM803343_hg19_wgEncodeHaibTfbsHepg2GabpPcr2xRawRep2.bigWig 49.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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