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Sample GSM802 Query DataSets for GSM802
Status Public on Feb 12, 2002
Title CGH_Albertson_GM03576-001218
Sample type genomic
 
Channel 1
Source name Cell line GM03576
Organism Homo sapiens
Characteristics Coriell cell line repository identifier: GM03576
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM03576
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
 
Channel 2
Source name normal male reference genomic DNA
Organism Homo sapiens
Biomaterial provider Coriell
Extracted molecule genomic DNA
 
 
Description Coriell Cell Repositories cell line <a href="http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM03576">GM03576</a>.
Fibroblast cell line derived from a 13 gestational week male fetus.
Trisomies 2 and 21 are present.
Karyotype is 48,XY,+2,+21
 
Submission date Jan 17, 2002
Last update date Nov 30, 2005
Contact name Donna G Albertson
E-mail(s) albertson@cc.ucsf.edu
Phone 415 502-8463
Organization name University of California San Francisco
Department Comprehensive Cancer Center
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL28
Series (1)
GSE16 Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF Unique row identifier, genome position order
VALUE aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV Standard deviation of VALUE
NO_REPLICATES Number of replicate spot measurements

Data table
ID_REF VALUE LINEAR_RATIO LOG2STDDEV NO_REPLICATES
1 1.058954 0.024586 3
2 0
3 0.004999 1.003471 0.011657 3
4 0.025438 1.017789 0.010179 3
5 0.06363 1.045092 0.007212 3
6 -0.000296 0.999795 0.010731 3
7 0.037151 1.026085 0.00509 3
8 -0.000058 0.99996 0.008986 3
9 0.004519 1.003138 0.014584 3
10 -0.016055 0.988933 0.004102 3
11 -0.010907 0.992468 0.004879 3
12 0
13 0.085673 1.061183 0.004016 3
14 -0.015741 0.989148 0.013325 3
15 0.057077 1.040356 0.009308 3
16 0.044392 1.031249 0.004558 3
17 0.095862 1.068704 0.003766 3
18 -0.019323 0.986696 0.008309 3
19 0.038807 1.027264 0.005279 3
20 0.007202 1.005004 0.004233 3

Total number of rows: 2463

Table truncated, full table size 77 Kbytes.




Supplementary data files not provided
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