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Sample GSM800841 Query DataSets for GSM800841
Status Public on Nov 30, 2011
Title pre-B_3h_b-Est_rep1
Sample type RNA
Source name B to M transdifferentiation sample
Organism Mus musculus
Characteristics cell type: Bone marrow derived cells (pre-B)
infection: C/EBPaER-GFP retrovirus
agent: b-Est
time: 3h
Treatment protocol GFP pos. cells were sorted and afetr re-seeding on stroma induced with b-Est. GFP pos cell were sorted at different imes thereafter
Growth protocol Pre-B cells were isolated, placed in duplicate on stromal cells plus cytokines, infected with an C/EBPaER-GFP retrovirus, GFP pos. cells sorted and after re-seeding on stroma induced with b-Est. Green cells were sorted at different times
Extracted molecule total RNA
Extraction protocol RNA was isolated by Trizol
Label Biotin
Label protocol RNAs were processed for Affymetrix 430.2 arrays as described in the manufacturer's instructions
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description Gene expression data from B to M transdifferentiation
Data processing The data have been normalized with RMA method, using Bioconductor in R
Submission date Sep 23, 2011
Last update date Nov 30, 2011
Contact name Thien-Phong Vu Manh
Organization name CIML
Street address 163 avenue de Luminy
City marseille
ZIP/Postal code 13288
Country France
Platform ID GPL1261
Series (1)
GSE32330 Expression data from C/EBP alpha induced transdifferentiation of pre-B cells into macrophages

Data table header descriptions
VALUE log2 normalized signal

Data table
1415670_at 9.02274833705514
1415671_at 8.82703205343521
1415672_at 10.0888211760980
1415673_at 9.07124888930198
1415674_a_at 8.64541313129914
1415675_at 8.85822816636236
1415676_a_at 11.7014605173032
1415677_at 6.98147241044347
1415678_at 10.3077428937744
1415679_at 10.9093340259440
1415680_at 10.4258504821584
1415681_at 8.91311881436026
1415682_at 6.77864224328422
1415683_at 11.8967980471988
1415684_at 6.56769666700927
1415685_at 7.9106362045489
1415686_at 9.05039458058519
1415687_a_at 9.33160709171026
1415688_at 10.2156898365633
1415689_s_at 8.50013058945216

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.

Supplementary file Size Download File type/resource
GSM800841.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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