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Sample GSM8002350 Query DataSets for GSM8002350
Status Public on Feb 14, 2024
Title barcoded_ss3_cortex
Sample type SRA
Source name brain
Organism Mus musculus
Characteristics tissue: brain
genotype: wildtype
treatment: lentivirus injection during embryogenesis
Extracted molecule polyA RNA
Extraction protocol Single cell FACS
Library strategy RNA-Seq
Library source transcriptomic single cell
Library selection cDNA
Instrument model Illumina NovaSeq 6000
Description smart-seq3 libraries of barcoded single cells isolated from S1 via single-cell sorting of EGFP+ cells into 384-well plates
Data processing zUMIs v2.9.7
Assembly: Mus_musculus.GRCm38.91
Supplementary files format and content: RDS, raw counts, UMI-counts, intron, exon, downsampled counts
Submission date Jan 04, 2024
Last update date Feb 14, 2024
Contact name Carl-Johan Wilheard Torkel Eriksson
Organization name Karolinska Institute
Department CMB
Lab Jonas Frisén
Street address Solnavägen 9
City Solna
State/province Stockholm
ZIP/Postal code 17145
Country Sweden
Platform ID GPL24247
Series (1)
GSE252510 Mouse Smartseq3 Data from Mold et al. Clonally Heritable Gene Expression Imparts a Layer of Diversity in Cell Types
BioSample SAMN39255953
SRA SRX23100627

Supplementary file Size Download File type/resource
GSM8002350_Smartseq3.dgecounts.rds.gz 3.8 Gb (ftp)(http) RDS
SRA Run SelectorHelp
Raw data are available in SRA

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