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Sample GSM800 Query DataSets for GSM800
Status Public on Feb 12, 2002
Title CGH_Albertson_GM03134-001218
Sample type genomic
 
Channel 1
Source name Cell line GM03134
Organism Homo sapiens
Characteristics Coriell cell line repository identifier: GM03134
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM03134
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
 
Channel 2
Source name normal male reference genomic DNA
Organism Homo sapiens
Biomaterial provider Coriell
Extracted molecule genomic DNA
 
 
Description Coriell Cell Repositories cell line <a href="http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM03134">GM03134</a>.
Fibroblast cell line derived from a 3 month old male with multiple congenital anomalies.
Chromosomal abnormalities are present.
Karyotype is 46,XY,del(8)(pter>q13::q22>qter)
 
Submission date Jan 17, 2002
Last update date Nov 30, 2005
Contact name Donna G Albertson
E-mail(s) albertson@cc.ucsf.edu
Phone 415 502-8463
Organization name University of California San Francisco
Department Comprehensive Cancer Center
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL28
Series (1)
GSE16 Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF Unique row identifier, genome position order
VALUE aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV Standard deviation of VALUE
NO_REPLICATES Number of replicate spot measurements

Data table
ID_REF VALUE LINEAR_RATIO LOG2STDDEV NO_REPLICATES
1 0.950777 0.01481 3
2 0
3 0.02617 1.018305 0.003235 3
4 -0.017889 0.987677 0.009048 3
5 0.048327 1.034065 0.004443 3
6 0.059511 1.042112 0.001573 2
7 -0.035042 0.976004 0.00387 3
8 0.025053 1.017517 0.005049 3
9 -0.059712 0.959456 0.004498 3
10 -0.046926 0.967997 0.010519 3
11 0.157643 1.115463 0.15783 3
12 0
13 0.053069 1.037469 0.008728 3
14 0.035591 1.024976 0.00943 3
15 0.062206 1.044061 0.002775 3
16 -0.038047 0.973973 0.018445 3
17 0.093562 1.067001 0.017554 3
18 -0.005821 0.995974 0.005743 3
19 0.018855 1.013155 0.003026 3
20 0.019643 1.013709 0.012156 3

Total number of rows: 2463

Table truncated, full table size 76 Kbytes.




Supplementary data files not provided
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