|
| Status |
Public on Oct 22, 2024 |
| Title |
SMA_PVMusc01 |
| Sample type |
SRA |
| |
|
| Source name |
paravetebral muscle
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: paravetebral muscle
genotype: sma_II
Sex: F
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNAeasy kit
Takara SMART-seq v4 kit for low-input samples
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
nf-core rnaseq
Deseq2 for differential expression analysis
Assembly: hg38
Supplementary files format and content: salmon.merged.gene_counts.tsv; tab delimited gene counts from salmon
Supplementary files format and content: salmon.merged.gene_tpm.tsv; tab delimited gene tpm from salmon
Supplementary files format and content: salmon.merged.transcript_counts.tsv; tab delmited transcript counts
|
| |
|
| Submission date |
Dec 27, 2023 |
| Last update date |
Oct 22, 2024 |
| Contact name |
Fiorella Grandi |
| E-mail(s) |
fiorella.grandi0@gmail.com
|
| Organization name |
Sorbonne Universite
|
| Department |
Centre de Recherche de Myologie
|
| Lab |
UMRS 974
|
| Street address |
105 Bld d'Hopital
|
| City |
Paris |
| ZIP/Postal code |
75013 |
| Country |
France |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE252128 |
Characterization of SMA Type II Skeletal Muscle from Treated Patients shows Mitochondrial Deficiency and Denervation |
|
| Relations |
| BioSample |
SAMN39152145 |
| SRA |
SRX23045121 |
