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Sample GSM799242 Query DataSets for GSM799242
Status Public on Feb 01, 2012
Title Normal Breast Sample ATM_31
Sample type genomic
 
Source name Human female breast tissue
Organism Homo sapiens
Characteristics tissue: Human breast tissue
disease status: healthy control
gender: Female
Extracted molecule genomic DNA
Extraction protocol DNA from normal breast samples was extracted using a conventional SDS/proteinase K/phenol method
Label biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol Standard Affymetrix hybridization protocol
Scan protocol Standard Affymetrix scanning protocol
Description A791-31.CEL
Human female breast tissue hybridised onto Genome-Wide Human SNP Array 6.0
Data processing The Affymetrix SNP 6.0 arrays data was pre-processed and analysed using the crlmm Bioconductor package (http://www.bioconductor.org/help/biocviews/release/bioc/html/crlmm.html) [Carvalho B, et al. Biostatistics 2007, 8:485-499] implemented in the R statistical programming language [Team RDC: R: A Language and Environment for Statistical Computing. 2010].
 
Submission date Sep 20, 2011
Last update date Feb 01, 2012
Contact name Ana Teresa Maia
Organization name University of Cambridge
Department Department of Oncology
Lab Cambridge Research Institute
Street address Robinson Way
City Cambridge
State/province Cambridgeshire
ZIP/Postal code CB2 0RE
Country United Kingdom
 
Platform ID GPL6801
Series (2)
GSE32258 Effects of BRCA2 cis-regulation in normal breast and cancer risk amongst BRCA2 mutation carriers [SNP data]
GSE32259 Effects of BRCA2 cis-regulation in normal breast and cancer risk amongst BRCA2 mutation carriers

Data table header descriptions
ID_REF
VALUE Genotype Call (SNP call): AA, AB, BB

Data table
ID_REF VALUE
SNP_A-2131660 AB
SNP_A-1967418 BB
SNP_A-1969580 BB
SNP_A-4263484 BB
SNP_A-1978185 AA
SNP_A-4264431 AA
SNP_A-1980898 BB
SNP_A-1983139 AA
SNP_A-4265735 AA
SNP_A-1995832 BB
SNP_A-1995893 BB
SNP_A-1997689 BB
SNP_A-1997709 AA
SNP_A-1997896 AB
SNP_A-1997922 AB
SNP_A-2000230 AA
SNP_A-2000332 AA
SNP_A-2000337 AA
SNP_A-2000342 AA
SNP_A-4268173 AA

Total number of rows: 906600

Table truncated, full table size 15050 Kbytes.




Supplementary file Size Download File type/resource
GSM799242.CEL.gz 28.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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