|
Status |
Public on Sep 20, 2011 |
Title |
Yale_ChipSeq_CH12_Input_IgG-Yale |
Sample type |
SRA |
|
|
Source name |
CH12
|
Organism |
Mus musculus |
Characteristics |
lab: Yale-m lab description: Weissman - Yale University datatype: ChipSeq datatype description: ChIP-Seq cell: CH12 cell organism: mouse cell description: B-cell lymphoma (GM12878 analog) cell sex: F antibody: Input antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called. treatment: None treatment description: No special treatment or protocol applies control: IgG-Yale control description: Input signal from Mouse IgG ChIP-seq prepared at Yale age: immortalized age description: Immortal cells control: IgG-Yale control description: Input signal from Mouse IgG ChIP-seq prepared at Yale controlid: CH12/None/Input/IgG-Yale replicate: 1 replicate description: tier 1 strain: B10.H-2aH-4bp/Wts strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
|
Biomaterial provider |
Weissman lab
|
Treatment protocol |
None
|
Growth protocol |
CH12_Weissman_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer II |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
|
|
Submission date |
Sep 19, 2011 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9250 |
Series (2) |
GSE32218 |
Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
|
Relations |
SRA |
SRX097685 |
BioSample |
SAMN00722061 |
Named Annotation |
GSM798326_mm9_wgEncodeSydhHistCh12InputIggyaleSig.bigWig |