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Sample GSM798324 Query DataSets for GSM798324
Status Public on Sep 20, 2011
Title Yale_ChipSeq_MEL_H3K4me3_IgG-Yale (superseded by GSM1003753)
Sample type SRA
Source name MEL
Organism Mus musculus
Characteristics lab: Yale-m
lab description: Weissman - Yale University
datatype: ChipSeq
datatype description: ChIP-Seq
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: IgG-Yale
control description: Input signal from Mouse IgG ChIP-seq prepared at Yale
age: immortalized
age description: Immortal cells
control: IgG-Yale
control description: Input signal from Mouse IgG ChIP-seq prepared at Yale
controlid: MEL/None/Input/IgG-Yale
replicate: 1
replicate description: tier 1
strain: Unknown
strain description: Unknown strain origin
Biomaterial provider Weissman lab
Treatment protocol None
Growth protocol MEL_Weissman_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Description ****************************
GSM798324 record metadata submitted on Sep 19 2011 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSM1003753
Data processing
Submission date Sep 19, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE32218 Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Superseded by GSM1003753
SRA SRX097683
BioSample SAMN00722059
Named Annotation GSM798324_mm9_wgEncodeSydhHistMelH3k4me3IggyaleSig.bigWig

Supplementary file Size Download File type/resource
GSM798324_mm9_wgEncodeSydhHistMelH3k04me3IggyalePk.narrowPeak.gz 349.6 Kb (ftp)(http) NARROWPEAK
GSM798324_mm9_wgEncodeSydhHistMelH3k4me3IggyaleSig.bigWig 210.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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