|
Status |
Public on Sep 20, 2011 |
Title |
Yale_ChipSeq_MEL_H3K4me3_IgG-Yale (superseded by GSM1003753) |
Sample type |
SRA |
|
|
Source name |
MEL
|
Organism |
Mus musculus |
Characteristics |
lab: Yale-m lab description: Weissman - Yale University datatype: ChipSeq datatype description: ChIP-Seq cell: MEL cell organism: mouse cell description: Leukemia (K562 analog) cell sex: M antibody: H3K4me3 antibody antibodydescription: rabbit polyclonal antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated. antibody vendorname: Millipore antibody vendorid: 07-473 treatment: None treatment description: No special treatment or protocol applies control: IgG-Yale control description: Input signal from Mouse IgG ChIP-seq prepared at Yale age: immortalized age description: Immortal cells control: IgG-Yale control description: Input signal from Mouse IgG ChIP-seq prepared at Yale controlid: MEL/None/Input/IgG-Yale replicate: 1 replicate description: tier 1 strain: Unknown strain description: Unknown strain origin
|
Biomaterial provider |
Weissman lab
|
Treatment protocol |
None
|
Growth protocol |
MEL_Weissman_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer II |
|
|
Description |
**************************** GSM798324 record metadata submitted on Sep 19 2011 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSM1003753 ****************************
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
|
|
Submission date |
Sep 19, 2011 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9250 |
Series (3) |
GSE32218 |
Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
Superseded by |
GSM1003753 |
SRA |
SRX097683 |
BioSample |
SAMN00722059 |
Named Annotation |
GSM798324_mm9_wgEncodeSydhHistMelH3k4me3IggyaleSig.bigWig |