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Sample GSM798322 Query DataSets for GSM798322
Status Public on Oct 05, 2011
Title Broad_ChipSeq_HeLa-S3_H3K4me1
Sample type SRA
Source name HeLa-S3
Organism Homo sapiens
Characteristics biomaterial_type: immortalized cell line
line: HeLa-S3
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell lineage: ectoderm
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: abcam
antibody vendorid: ab8895
treatment: None
treatment description: No special treatment or protocol applies
controlid: wgEncodeEH001013
replicate: 1,2
softwareversion: ScriptureVPaperR3
antibody vendorname: Abcam
antibody vendorid: ab8895
control: std
control description: Standard input signal for most experiments.
controlid: HeLa-S3/Input/std
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
Data processing
Submission date Sep 19, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10999
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX099899
BioSample SAMN00737738
Named Annotation GSM798322_hg19_wgEncodeBroadHistoneHelas3H3k04me1StdSig.bigWig

Supplementary file Size Download File type/resource
GSM798322_hg19_wgEncodeBroadHistoneHelas3H3k04me1StdAlnRep1.bam 823.1 Mb (ftp)(http) BAM
GSM798322_hg19_wgEncodeBroadHistoneHelas3H3k04me1StdAlnRep2.bam 966.3 Mb (ftp)(http) BAM
GSM798322_hg19_wgEncodeBroadHistoneHelas3H3k04me1StdPk.broadPeak.gz 1.7 Mb (ftp)(http) BROADPEAK
GSM798322_hg19_wgEncodeBroadHistoneHelas3H3k04me1StdSig.bigWig 419.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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