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Sample GSM797452 Query DataSets for GSM797452
Status Public on Sep 01, 2013
Title del175k mutant_ChIPSeq
Sample type SRA
Source name osteoblast
Organism Mus musculus
Characteristics genotype/variation: del175k mutant
antibody: sc-30486
vendor: Santa Cruz biotechnology
strain: 129sv
cell type: primary osteoblast
Growth protocol The primary osteoblasts of Tnni2del175k/175k mice and wild-type littermates was used for ChiP-Seq
Extracted molecule genomic DNA
Extraction protocol The part of ChIP assays in ChIP-seq study are performed as the protocol of this paper, Schmidt, D. et al., ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. Methods 48 (3), 240-248 (2009).
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Description Chromatin IP against tnni2
Data processing Raw reads were aligned with the mouse reference 8 using Bowtie software and viewed with the IGV browser.
Submission date Sep 15, 2011
Last update date May 15, 2019
Contact name xiaoquan zhu
Organization name beijing hospital
Street address N01 dahua road dongdan beijing
City beijing
ZIP/Postal code 100730
Country China
Platform ID GPL13112
Series (2)
GSE32166 tnni2 Binding Genome Seqences
GSE32401 Tnni2del175k mutant mice and their wild-type littermates using mRNA array and ChIP-seq
SRA SRX099194
BioSample SAMN00727929

Supplementary file Size Download File type/resource
GSM797452_chipH.0706.bed.gz 47.5 Mb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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