GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM797

Query DataSets for GSM797

Status

Public on Feb 12, 2002

Title

CGH_Albertson_GM01535-001218

Sample type

genomic

Channel 1

Source name

Cell line GM01218

Organism

Homo sapiens

Characteristics

Coriell cell line repository identifier: GM01535
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM01535

Biomaterial provider

Coriell Cell Repositories
Coriell

Extracted molecule

genomic DNA

Channel 2

Source name

normal male reference genomic DNA

Organism

Homo sapiens

Biomaterial provider

Coriell

Extracted molecule

genomic DNA

Description

Coriell Cell Repositories cell line <a href="http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM01535">GM01535</a>.
Fibroblast cell line derived from a 16 year old female. Chromosomal abnormalities are present.
Karyotype is 46,XX,-12,+der(12)t(5;12)(12pter> 12q24::5q33>5qter)mat

Submission date

Jan 17, 2002

Last update date

Nov 30, 2005

Contact name

Donna G Albertson

E-mail(s)

albertson@cc.ucsf.edu

Phone

415 502-8463

Organization name

University of California San Francisco

Department

Comprehensive Cancer Center

Street address

City

San Francisco

State/province

ZIP/Postal code

94143

Country

USA

Platform ID

GPL28

Series (1)

GSE16

Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF	Unique row identifier, genome position order
VALUE	aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO	Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV	Standard deviation of VALUE
NO_REPLICATES	Number of replicate spot measurements

Data table
ID_REF	VALUE	LINEAR_RATIO	LOG2STDDEV	NO_REPLICATES
1		1.081258	0.024401	3
2				0
3	0.007281	1.00506	0.004231	3
4	-0.023923	0.983555	0.005558	3
5	0.086715	1.061949	0.007297	3
6	0.003886	1.002697	0.001241	3
7	-0.049983	0.965948	0.021931	3
8	-0.002775	0.998079	0.008357	3
9	-0.135067	0.910628	0.012203	3
10	-0.080434	0.945773	0.005845	3
11	-0.032122	0.977981	0.010748	3
12				0
13	0.120816	1.08735	0.01201	3
14	0.068592	1.048693	0.003349	3
15	0.167667	1.12324	0.053897	3
16	-0.08409	0.943379	0.00907	3
17	0.061534	1.043575	0.011189	3
18		0.969817	0	1
19	0.028241	1.019768	0.002223	3
20	0.012577	1.008756	0.02292	3

Total number of rows: 2463

Table truncated, full table size 75 Kbytes.

Supplementary data files not provided